Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| GBM | rs9620341 | chr22:24312589 | G/A | 8.64E-8 | 144 | 11.42 | 13.5 | 1.62 | KM Plot |
| GBM | rs9896098 | chr17:27008721 | G/A | 2.22E-5 | 147 | 11.95 | 8.37 | 1.2 | KM Plot |
| GBM | rs9900500 | chr17:27035953 | G/A | 1.77E-5 | 147 | 12.33 | 8.37 | 1.2 | KM Plot |
| GBM | rs9907186 | chr17:27018597 | A/G | 2.22E-5 | 146 | 12 | 8.37 | 1.2 | KM Plot |
| GBM | rs9913656 | chr17:27040619 | A/G | 1.76E-5 | 148 | 12 | 8.37 | 1.2 | KM Plot |
| GBM | rs9922476 | chr16:67478924 | A/G | 2.26E-7 | 148 | 12 | 9.55 | 0.97 | KM Plot |
| GBM | rs9936306 | chr16:67455559 | C/T | 2.26E-7 | 148 | 12 | 9.55 | 0.97 | KM Plot |
| GBM | rs9936320 | chr16:67455604 | C/A | 2.26E-7 | 148 | 12 | 9.55 | 0.97 | KM Plot |
| GBM | rs9937212 | chr16:67449231 | G/A | 8.86E-8 | 147 | 12 | 9.8 | 0.97 | KM Plot |
| HNSC | rs10019830 | chr4:77222932 | A/T | 3.9E-6 | 398 | 8.47 | 18.1 | 15.35 | KM Plot |
| HNSC | rs10019831 | chr4:77222933 | A/C | 3.9E-6 | 398 | 8.47 | 18.1 | 15.35 | KM Plot |
| HNSC | rs1004058 | chr22:24482500 | A/C | 3.02E-6 | 412 | 8.63 | 15.87 | 16.33 | KM Plot |
| HNSC | rs10096661 | chr8:92168065 | A/G | 1.62E-7 | 407 | 16.25 | 14.13 | 5.4 | KM Plot |
| HNSC | rs10106250 | chr8:11581846 | A/G | 8.7E-8 | 412 | 5.57 | 15.57 | 16.65 | KM Plot |
| HNSC | rs10114286 | chr9:21401193 | A/G | 7.35E-9 | 412 | 16.23 | 19.05 | 4.2 | KM Plot |